SNP Profiles matching DOM 30

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 Key

 1234567891011121314
_Input profile
TTACCCTTCCAGAACCAACCGGGGCCAA
1._MAR_1
__CCTTCC_AA-AACC___AA
2._MAR_20
__CCTTCC_AA-AACC___AA
3._RUQ_683
TTCCCCTTCCAGAACCAACCGGGGCCAA
4._RUQ_557
TTCCCCTTCCGGAACCAACCGGGGCCAA
5._RUQ_554
TTCCCCTTCCGGAACCAACCGGGGCCAA
6._RUQ_553
TTCCCCTTCCGGAACCAA-GGGG--
7._BE_10
__CCTTCC_AACCAACC___AA
8._BE_10
__CCTTCC_AACCAACC___AA
9._BE_10
__CCTTCC_AACCAACC___AA
10._BE_10
__CCTTCC_AACCAACC___AA
11._BE_10
__CCTTCC_AACCAACC___AA
12._BE_10
__CCTTCC_AACCAACC___AA
13._BE_10
__CCTTCC_AACCAACC___AA
14._BE_10
__CCTTCC_AACCAACC___AA
15._BE_10
__CCTTCC_AACCAACC___AA
16._BE_10
__CCTTCC_AACCAACC___AA
17._GU_207_/H
__CCTTCC_AACCAACC___AA
18._GU_207_/H
__CCTTCC_AACCAACC___AA
19._GU_207_/H
__CCTTCC_AACCAACC___AA
20._GU_207_/H
__CCTTCC_AACCAACC___AA
21._GU_207_/H
__CCTTCC_AACCAACC___AA
22._GU_207_/H
__CCTTCC_AACCAACC___AA
23._GU_207_/H
__CCTTCC_AACCAACC___AA
24._GU_207_/H
__CCTTCC_AACCAACC___AA
25._JA_9_/37_[POU]
__CCTTCC_AACCAACC___AA
26._JA_9_/37_[POU]
__CCTTCC_AACCAACC___AA
27._JA_9_/37_[POU]
__CCTTCC_AACCAACC___AA
28._JA_9_/37_[POU]
__CCTTCC_AACCAACC___AA
29._AMAZ_5_/2
__CCTTCC_AACCAACC___AA
30._LCT_EEN_90_/S-7
__CCTTCC_AA-AACC___AA
31._BE_10
__CCTT__AACCAACC___AA
32._BE_10
__CCTTCC_AACCAACC___AA
33._GU_207_/H
___TTCC_AACCAACC___AA
34._GU_207_/H
__CCTTCC__CCAACC___AA
35._RUQ_678
TTCCCCTTCCGGAACCAACCGGGGCCAA
 1516171819202122232425262728
_Input profile
CCTTGGAACCTTTTGGGGTTACGGCCCC
1._MAR_1
CCTTGGAA_TT_-___GGCCCC
2._MAR_20
CCTTGGAA_TT_-___GGCCCC
3._RUQ_683
CCTTGGAACCTTTTGGGGTTCCCGCCCC
4._RUQ_557
CCTTGGAACCTTTTGGGGTTAAGGCCCC
5._RUQ_554
CCTTGGAACCCCTTGGGGTTCCGGCCCC
6._RUQ_553
CC-GGAATTTTTTGG-TT--CCCC
7._BE_10
CCTTCCAA_TT_GG___GG_CC
8._BE_10
CCTTCCAA_TT_GG___GG_CC
9._BE_10
CCTTCCAA_TT_GG___GG_CC
10._BE_10
CCTTCCAA_TT_GG___GG_CC
11._BE_10
CCTTCCAA_TT_GG___GG_CC
12._BE_10
CCTTCCAA_TT_GG___GG_CC
13._BE_10
CCTTCCAA_TT_GG___GG_CC
14._BE_10
CCTTCCAA_TT_GG___GG_CC
15._BE_10
CCTTCCAA_TT_GG___GG_CC
16._BE_10
CCTTCCAA_TT_GG___GG_CC
17._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
18._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
19._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
20._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
21._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
22._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
23._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
24._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
25._JA_9_/37_[POU]
CCTTCCAA_TT_GG___GG_CC
26._JA_9_/37_[POU]
CCTTCCAA_TT_GG___GG_CC
27._JA_9_/37_[POU]
CCTTCCAA_TT_GG___GG_CC
28._JA_9_/37_[POU]
CCTTCCAA_TT_GG___GG_CC
29._AMAZ_5_/2
CCTTCCAA_TT_GG___GG_CC
30._LCT_EEN_90_/S-7
CCTTCCAA_TT_GG___GGCCCC
31._BE_10
CCTTCCAA_TT_GG___GG_CC
32._BE_10
CCTTCCAA_TT_GG___GG_CC
33._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
34._GU_207_/H
CCTTCCAA_TT_GG___GG_CC
35._RUQ_678
CCTTGGCCTTTTTTGGGGTTCCGGCCCC
 29303132333435363738394041 
_Input profile
AAAATTCCGGAATTTTCTTTCCGGAAX_X
1._MAR_1
_AA_CC___TT__CCGGAAX_X
2._MAR_20
_AA_CC___TT__CCGGAAX_X
3._RUQ_683
-AATTCCGGAATTTTTTTTCCGGAAX_X
4._RUQ_557
-AATTCCGGAATTTTTTTTCCGGAAX_X
5._RUQ_554
AAAATTCCGGAATTTTTTTTCCGGAAX_X
6._RUQ_553
-AA-CCGG-TTTTTT--GGAAX_X
7._BE_10
_GG_CC___TT__CCGGAAX_X
8._BE_10
_GG_CC___TT__CCGGAAX_X
9._BE_10
_GG_CC___TT__CCGGAAX_X
10._BE_10
_GG_CC___TT__CCGGAAX_X
11._BE_10
_GG_CC___TT__CCGGAAX_X
12._BE_10
_GG_CC___TT__CCGGAAX_X
13._BE_10
_GG_CC___TT__CCGGAAX_X
14._BE_10
_GG_CC___TT__CCGGAAX_X
15._BE_10
_GG_CC___TT__CCGGAAX_X
16._BE_10
_GG_CC___TT__CCGGAAX_X
17._GU_207_/H
_GG_CC___TT__CCGGAAX_X
18._GU_207_/H
_GG_CC___TT__CCGGAAX_X
19._GU_207_/H
_GG_CC___TT__CCGGAAX_X
20._GU_207_/H
_GG_CC___TT__CCGGAAX_X
21._GU_207_/H
_GG_CC___TT__CCGGAAX_X
22._GU_207_/H
_GG_CC___TT__CCGGAAX_X
23._GU_207_/H
_GG_CC___TT__CCGGAAX_X
24._GU_207_/H
_GG_CC___TT__CCGGAAX_X
25._JA_9_/37_[POU]
_GG_CC___TT__CCGGAAX_X
26._JA_9_/37_[POU]
_GG_CC___TT__CCGGAAX_X
27._JA_9_/37_[POU]
_GG_CC___TT__CCGGAAX_X
28._JA_9_/37_[POU]
_GG_CC___TT__CCGGAAX_X
29._AMAZ_5_/2
_GG_CC___TT__CCGGAAX_X
30._LCT_EEN_90_/S-7
_GG_CC___TT__CCGGAAX_X
31._BE_10
_GG_CC___TT__CCGGAAX_X
32._BE_10
_GG_CC______CCGGAAX_X
33._GU_207_/H
_GG_CC___TT__CCGGAAX_X
34._GU_207_/H
_GG_CC___TT__CCGGAAX_X
35._RUQ_678
-AATTCCGGAATTTTTTTTCCGGAAX_X

Input profile: DOM_30 RUQ_549

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._MAR_1

identical
21 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B188 T1
 Dapeng Zhang, 2014

2._MAR_20

identical
21 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B253 T1
 Dapeng Zhang, 2014

3._GS_13 RUQ_683

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._MAR_9 RUQ_557

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GDL_7 RUQ_554

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._GDL_3 RUQ_553

91.4 %
29 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

8._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

9._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

10._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

11._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

12._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

13._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

14._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

16._BE_10

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 6 > FP
 Dapeng Zhang, 2016

18._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 12 > F
 Dapeng Zhang, 2016

19._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 1 > FP
 Dapeng Zhang, 2016

20._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 11
 Dapeng Zhang, 2016

21._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 10
 Dapeng Zhang, 2016

22._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 9
 Dapeng Zhang, 2016

23._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 7
 Dapeng Zhang, 2016

24._GU_207_/H

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 4
 Dapeng Zhang, 2016

25._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 4 > FP
 Dapeng Zhang, 2016

26._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 3 > FP
 Dapeng Zhang, 2016

27._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 1 > FP
 Dapeng Zhang, 2016

28._JA_9_/37_[POU]

90.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8193 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._AMAZ_5_/2

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A20 T1
 Dapeng Zhang, 2016

30._LCT_EEN_90_/S-7

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 178 T1
 Dapeng Zhang, 2014

31._BE_10

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

32._BE_10

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

33._GU_207_/H

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 13
 Dapeng Zhang, 2016

34._GU_207_/H

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1311 2
 Dapeng Zhang, 2016

35._LCT_EEN_62_/S-4 RUQ_678

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP560 17TcSNP577 18TcSNP591 19TcSNP602 20TcSNP619
21TcSNP702 22TcSNP723 23TcSNP731 24TcSNP799 25TcSNP823
26TcSNP872 27TcSNP878 28TcSNP891 29TcSNP899 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484